PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025122m
Common NameCICLE_v10025122mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 645aa    MW: 70527.8 Da    PI: 9.7212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025122mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05152174123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Ciclev10025122m 152 FVCEICNKGFQRDQNLQLHRRGH 174
                      89*******************88 PP

2zf-C2H212.30.0005228250123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  Ciclev10025122m 228 WKCDKCSKRYAVQSDWKAHSKTC 250
                      58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-5151174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-7151174No hitNo description
SMARTSM003550.017152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949152174IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM00355140193223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4216249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-7223248No hitNo description
SMARTSM00355140228248IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MMRGKKSKGQ IRQQAHNIHL FSSTSLSLSL SPPLSVSILC VQEDLCDSRF NLVKSPREKM  60
MKGLIFHQQQ QQQQQVLEEN MSNLTSQSGT EASVSSGNIR GAETTNHQQY FATPPTQAQP  120
PAKKKRNLPG NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL  180
KQRTSKEIRK KVYVCPEPNC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ  240
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESTRAITGT NPILSSSSHH  300
QPGIVAGASS HVNLQIPQFN PQDFSAFSLK KEQQSYSLRQ EMPPWLGSQQ PSILGSAVPG  360
LGQPPSSSHT VDHLSSPSSS IFNTRLHQDH QFTQTTHQDL TRNDHPANPN PSLGPTLSVP  420
HTNYHQAMAS AFPHMSATAL LQKAAQMGAT MSSSKASTAT GNSSSSSSPA HHAALTRPHQ  480
QPPPPQQAHV SATPEHPAGN NKTKTTTGFG LNLSSREGVV HGLTPFGTKT SGGGSSGPFI  540
QEMLMNTSFS SGYAAASPFD DALTFGGVFN SKKEPHLNHS FNESSSLSRT SGINDHGEEM  600
TRDFLGLRAL SQTDILNIAG LGNCIDTRSS HEQQLNHSQK PWQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178190KLKQRTSKEIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-131AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426554.10.0hypothetical protein CICLE_v10025122mg
SwissprotQ8H1F51e-120IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLV4UKA40.0V4UKA4_9R
STRINGVIT_09s0002g02300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-118indeterminate(ID)-domain 7